Clc Sequence Viewer 8 Download Mac

Bioinformatics image

Bioinformatics

Modern molecular biological science is impossible without admission to the tools needed for everything from bones sequence management software and primer calculators to informatics databases and reference managers.

This page will serve every bit an ever-growing repository of some of the most necessary DNA tools that the OUGF is aware of, and it volition go on to abound equally new and better resources become bachelor.

Computing Power

The High Performance Computing (HPC) Cluster at Ohio University:

  • Four Dell PowerEdge R7515 type servers each with 64 physical AMD CPU cores and 1TB of RAM for a total of 256 CPU cores, 512 GHz of capacity, iv TB of RAM, and 50 TB of local storage.
  • The servers are integrated using VMware's vSphere as the hypervisor and vSAN equally the clustered disk file system. Ubuntu Linux servers are dynamically provisioned on demand with 8 vCPU and 16 GB of RAM per system using VMware'due south Horizon View desktop virtualization software. Larger systems tin can be provisioned every bit needed upon asking.
  • The Ubuntu Linux servers can be accessed by authorized faculty and students via Ohio University's network either through Horizon View's virtual desktop (VDI) or Ohio Academy'southward campus Virtual Private Network (VPN) software.
  • For access to the server please fill out this form.

Publication and Sequence Databases

The National Middle for Biotechnology Information is run by the National Library of Medicine and the National Institutes of Health. This database includes sequence information (Genome, Cistron, SNP, etc.), experimental data (GEO, BioSystems, ClinVar, etc.), software (Blast, COBALT, OSIRIS, etc.), literature (PubMed, MeSH database, Bookshelf, etc.), and much more. A good identify to start is the NCBI handbook and their training and tutorials.

The European Bioinformatics Establish is the European counterpart to NCBI

The Joint Genome Institute is run by the Department of Free energy and has a huge suite of Data and Tools for finding sequences, genomes, proteomes, and many cantankerous-referenced databases for assembly of large sets of data.

The Ohio University Library has access to a large number of peer reviewed journals and several big publication databases.

Sequence Management and Manipulation Software

CLC Genomics Workbench

  • CLC Genomics Workbench is licensed software for sequence storage and manipulation (cloning, primer design, restriction mapping, etc.) as well as NGS data analysis. The OUGF currently maintains ii licenses for this software. For information on how to admission CLC Genomics Workbench please email Dr. Nigel Daniels
  • The CLC Tutorials and Manual are both good resource for getting started.

CLC Sequence Viewer

QIIME ii.0

  • QIIME ii™ is a next-generation microbiome bioinformatics platform that is extensible, gratuitous, open source, and community adult. The current standard for microbiome analysis.
  • QIIME two.0 has many tutorials to follow and can exist learned fifty-fifty if yous are not familiar with Linux/Command Line Tools. Microbiome Assay with QIIME2:A Hands-On Tutorial, another good tutorial.

Others

IDT Oligo Analyzer

  • Primer design tool for calculating the melt temp, GC content, dimerization, and other characterization of primers
  • IDT also maintains tools for Primer design for qPCR experiments

Milky way

  • Workflow design for automating analysis of large datasets and batches

Quick Calculators

  • A set of calculators for quick use in statistics, data simulation, molarity calculators, and many more than.

Clc Sequence Viewer 8 Download Mac

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